Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance
Identifieur interne : 000020 ( Main/Exploration ); précédent : 000019; suivant : 000021Transcriptome Profiling of Huanglongbing (HLB) Tolerant and Susceptible Citrus Plants Reveals the Role of Basal Resistance in HLB Tolerance
Auteurs : Yunsheng Wang [République populaire de Chine, États-Unis] ; Lijuan Zhou [États-Unis] ; Xiaoyue Yu [États-Unis] ; Ed Stover [États-Unis] ; Feng Luo [République populaire de Chine, États-Unis] ; Yongping Duan [États-Unis]Source :
- Frontiers in Plant Science [ 1664-462X ] ; 2016.
Abstract
Huanglongbing (HLB) is currently the most destructive disease of citrus worldwide. Although there is no immune cultivar, field tolerance to HLB within citrus and citrus relatives has been observed at the USDA Picos farm at Ft. Pierce, Florida, where plants have been exposed to a very high level of HLB pressure since 2006. In this study, we used RNA-Seq to evaluate expression differences between two closely related cultivars after HLB infection: HLB-tolerant “Jackson” grapefruit-like-hybrid trees and HLB susceptible “Marsh” grapefruit trees. A total of 686 genes were differentially expressed (DE) between the two cultivars. Among them, 247 genes were up-expressed and 439 were down-expressed in tolerant citrus trees. We also identified a total of 619 genes with significant differential expression of alternative splicing isoforms between HLB tolerant and HLB susceptible citrus trees. We analyzed the functional categories of DE genes using two methods, and revealed that multiple pathways have been suppressed or activated in the HLB tolerant citrus trees, which lead to the activation of the basal resistance or immunity of citrus plants. We have experimentally verified the expressions of 14 up-expressed genes and 19 down-expressed genes on HLB-tolerant “Jackson” trees and HLB-susceptible “Marsh” trees using real time PCR. The results showed that the expression of most genes were in agreement with the RNA-Seq results. This study provided new insights into HLB-tolerance and useful guidance for breeding HLB-tolerant citrus in the future.
Url:
DOI: 10.3389/fpls.2016.00933
PubMed: 27446161
PubMed Central: 4923198
Affiliations:
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sortKey="Zhou, Lijuan" sort="Zhou, Lijuan" uniqKey="Zhou L" first="Lijuan" last="Zhou">Lijuan Zhou</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>U.S. Horticultural Research Laboratory, Agricultural Research Service</institution><country>Fort Pierce, FL, USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Yu, Xiaoyue" sort="Yu, Xiaoyue" uniqKey="Yu X" first="Xiaoyue" last="Yu">Xiaoyue Yu</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>U.S. Horticultural Research Laboratory, Agricultural Research Service</institution><country>Fort Pierce, FL, USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea></wicri:regionArea></affiliation></author><author><name sortKey="Stover, Ed" sort="Stover, Ed" uniqKey="Stover E" first="Ed" last="Stover">Ed Stover</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>U.S. 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last="Duan">Yongping Duan</name><affiliation wicri:level="1"><nlm:aff id="aff3"><institution>U.S. Horticultural Research Laboratory, Agricultural Research Service</institution><country>Fort Pierce, FL, USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea></wicri:regionArea></affiliation></author></analytic><series><title level="j">Frontiers in Plant Science</title><idno type="eISSN">1664-462X</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Huanglongbing (HLB) is currently the most destructive disease of citrus worldwide. Although there is no immune cultivar, field tolerance to HLB within citrus and citrus relatives has been observed at the USDA Picos farm at Ft. Pierce, Florida, where plants have been exposed to a very high level of HLB pressure since 2006. In this study, we used RNA-Seq to evaluate expression differences between two closely related cultivars after HLB infection: HLB-tolerant “Jackson” grapefruit-like-hybrid trees and HLB susceptible “Marsh” grapefruit trees. A total of 686 genes were differentially expressed (DE) between the two cultivars. Among them, 247 genes were up-expressed and 439 were down-expressed in tolerant citrus trees. We also identified a total of 619 genes with significant differential expression of alternative splicing isoforms between HLB tolerant and HLB susceptible citrus trees. We analyzed the functional categories of DE genes using two methods, and revealed that multiple pathways have been suppressed or activated in the HLB tolerant citrus trees, which lead to the activation of the basal resistance or immunity of citrus plants. We have experimentally verified the expressions of 14 up-expressed genes and 19 down-expressed genes on HLB-tolerant “Jackson” trees and HLB-susceptible “Marsh” trees using real time PCR. The results showed that the expression of most genes were in agreement with the RNA-Seq results. This study provided new insights into HLB-tolerance and useful guidance for breeding HLB-tolerant citrus in the future.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Albrecht, U" uniqKey="Albrecht U">U. Albrecht</name></author><author><name sortKey="Bowman, K D" uniqKey="Bowman K">K. D. 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Wu</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>République populaire de Chine</li><li>États-Unis</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Wang, Yunsheng" sort="Wang, Yunsheng" uniqKey="Wang Y" first="Yunsheng" last="Wang">Yunsheng Wang</name></noRegion><name sortKey="Luo, Feng" sort="Luo, Feng" uniqKey="Luo F" first="Feng" last="Luo">Feng Luo</name></country><country name="États-Unis"><noRegion><name sortKey="Wang, Yunsheng" sort="Wang, Yunsheng" uniqKey="Wang Y" first="Yunsheng" last="Wang">Yunsheng Wang</name></noRegion><name sortKey="Duan, Yongping" sort="Duan, Yongping" uniqKey="Duan Y" first="Yongping" last="Duan">Yongping Duan</name><name sortKey="Luo, Feng" sort="Luo, Feng" uniqKey="Luo F" first="Feng" last="Luo">Feng Luo</name><name sortKey="Stover, Ed" sort="Stover, Ed" uniqKey="Stover E" first="Ed" last="Stover">Ed Stover</name><name sortKey="Yu, Xiaoyue" sort="Yu, Xiaoyue" uniqKey="Yu X" first="Xiaoyue" last="Yu">Xiaoyue Yu</name><name sortKey="Zhou, Lijuan" sort="Zhou, Lijuan" uniqKey="Zhou L" first="Lijuan" last="Zhou">Lijuan Zhou</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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